CHAI Seminar Series: David Page, PhD - Machine Learning from Irregularly-Sampled Temporal Data: A Case Study in Predicting Across Most Diseases in Electronic Health Records

Speaker: David Page, PhD, Vilas Distinguished Achievement Professor in the Department of Biostatistics and Medical Informatics at the School of Medicine and Public Health at the University of Wisconsin-Madison. Joint Appointment in the Department of Computer Sciences.

Date: Tuesday, February 27, 2018

Time: 03:00pm – 04:15pm

Location:  Klaus Advanced Computing Building, Room 2443

Abstract: Much of the world’s real data on people is irregularly-sampled, temporal, and observational (meaning we don’t get to experiment as in a randomized clinical trial).   For example, customers make purchases on various dates of their choice, not necessarily once a week or once a month, and we only observe rather than intervene in their decisions.  Patients visit the doctor whenever they feel the need, and we observe their doctors’ entries in the electronic health record (EHR), without the ability to randomize patient treatments.  We show that despite this lack of control or sampling regularity, we can predict future events from such data with surprising accuracy, for example better than 80% on average across a variety of diagnosis codes in the EHR a month in advance.  We further show that despite many types of potential confounding, we can actually discover causal factors (e.g., effect of a drug on a disease or on a measurement such as blood pressure) at similar levels of accuracy for real problems.  The key to doing so is modeling person-specific, time-varying baseline levels, e.g. of a measurement such as blood pressure or a risk such as for heart attack.  On the applied side this talk will focus entirely on medical applications, but the approaches developed and employed are general-purpose machine learning algorithms with broad potential applicability.

Bio: David Page is a Kellett and Vilas Distinguished Achievement Professor at the University of Wisconsin-Madison.  His tenure home is in the School of Medicine and Public Health, Dept. of Biostatistics and Medical Informatics, and he also has an appointment in the Department of Computer Sciences where he supervises PhD students and teaches machine learning.  David has a PhD in Computer Science from the University of Illinois at Urbana-Champaign (1993), where his thesis proved properties of algorithms that learn from relational databases and/or first-order logic.  He became involved in biomedical applications of machine learning while a post-doc and visiting faculty member at Oxford University, collaborating with various pharmaceutical companies and what was then the Imperial Cancer Research Fund.  David is the faculty lead of the Cancer Informatics Core of UW-Madison’s Carbone Cancer Center, is a member of the Genome Center of Wisconsin, and served on scientific advisory boards for the Observational Medical Outcomes Partnership and the Wisconsin Genomics Initiative.  He has served as a standing member of NIH study sections BDMA (Biodata Management and Analysis, when it first became a standing study section) and BLR (Biomedical Data, Library and Data Science Review Committee, currently serving).

Event Details

Location:

    Klaus Advanced Computing Building, #2443, 266 Ferst Dr NW, Atlanta, GA 30332

Date/Time:

  • Tuesday, February 27, 2018
    3:00 pm - 4:15 pm